SDSU Foundations of Neuroimaging
BACKGROUND READING -- Fall 2022
UNDER CONSTRUCTION
Math Resources:
MATLAB Primer
Free Software:
FreeSurfer (MGH)
csurf (FreeSurfer-compatible retinotopy/hi-res tools)
AFNI
FSL
SPM12
Web MRI Resources:
Allen D. Elster (2018)
MRI Questions
Hornak, J.P. (2017)
The Basics of MRI
D.M. Higgins (2017)
K-space Tool
Carl D. Gregory (1998)
MRI Artifact Gallery
Jody Culham (2017) fMRI 4 Newbies
Neuroimaging Books:
Huettel, S., A.W. Song, and G. McCarthy, 3rd ed. (2014)
Functional Magnetic Resonance Imaging
Liang, Z.-P. and P.C Lauterbur (1999)
Principles of Magnetic Resonance Imaging
Nishimura, D.G. (1996)
Principles of Magnetic Resonance Imaging
Buxton, R., 2nd ed. (2009)
Introduction to Functional Magnetic Resonance Imaging
Haacke, E.M., R.W. Brown, M.R. Thompson, and R. Venkatesan, 2nd ed. (2014)
Magnetic Resonance Imaging
Bernstein, M.A., K.F. King, and X.J. Zhou (2004)
Handbook of MRI Pulse Sequences
Nunez, P.L (1981)
Electric Fields of the Brain
Background:
Bracewell, R.N. (2000) The Fourier Transform and its Applications
Oppenheim, A.V. and A.S. Willsky (1997) Signals and Systems
Karu, Z.Z. (1995) Signals and Systems Made Ridiculously Easy
Wangsness, R.K. (1986) Electromagnetic Fields
Greenberg, M.D. (1978) Foundations of Applied Mathematics
Koch, C. and I. Segev (1998) Methods in Neuronal Modeling
Johnston, D. and S.M.-S. Wu (1995) Foundations of Cellular Neurophysiology
[updates of following papers in progress]
Pulse Sequences:
QUIPSS II
Turbo ASL
Spherical Navigators
SENSE
SPACE RIP
Inverse Method Distortion Correction
Point-Spread Function Mapping Distortion Correction
Hyperechoes
Optimized 3D FSE
Simultaneous Multi-Slice Review
MRI Data Analysis:
Estimation, and Predictability
Detection, Estimation, and Predictability
3dDeconvolve
Visual Mapping:
Field Sign Analysis of Retinotopy
Owl Monkey Retinotopy
Original Human Visual Areas
Visual Mapping Review '98
Visual Mapping Review '05
Visual Mapping Review '14
Visual Mapping Review '18
Retinotopy Step-by-Step
Human V1
Human V3A
Ipsilateral Representation
Human V4
Human V6
Human V7
Human V8
Human MT/MST
Human LIP
Human VIP Multisensory
Visual Tracking
Frontal Maps
Visual Maps and Imagined Navigation
Language, Scenes, and Sensorimotor Maps:
Visual/Auditory/Somatomotor Maps and Language
Maps, Reading and Scene Comprehension
Auditory Mapping Papers:
Auditory Phase-Map
Attention-Driven Tonotopy
Somatosensory Mapping:
Somatosensory Phase-Map
Mouth Maps
Reach to Eat
Reach to Eat Movie (mp4)
Dale and Sereno, 93: (cortical surface + EEG/MEG inverse)
journal scan
manuscript
(equations more readable)
Cortical Surface Reconstruction:
Segmentation and Reconstruction
Inflation, Flattening, Coordinates
Inter-Subject Morphing
Cortical Thickness
Topology Repair
Montreal Cortical Surface Method
Van Essen Surface-Based Atlas
EEG and MEG Localization Methods:
EEG Forward Solution Review
Noise Sensitivity Normalized Inverse
Mapping the Conductivity Tensor
EEG and MEG Localization Results:
Noise Sensitivity Normalized Inverse--Data
fMRI/EEG Attention Mapping
N400 Localization
Retinotopically Constrained Localization
Non-Linear Optimization of Retinotopically Constrained Localization
Intracortical EEG:
Surface Plus Laminar Analysis
3D CSD of Rat BAER
1D CSD of Multiple Macaque Visual Areas